Gluten Free Mini Cheesecakes

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Learn the simple steps to make luscious gluten-free mini cheesecakes using a muffin pan. No complicated tools like water baths or springform pans are required—just cupcake liners! The creamy texture pairs perfectly with the crunchy graham foundation. Serve plain or jazz them up with whipped cream, fruit, or caramel. They're freezer-friendly, ideal for parties, and a breeze to make in advance!

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Updated on Tue, 06 May 2025 12:34:52 GMT
Dessert plate topped with berries and whipped cream. Pin it
Dessert plate topped with berries and whipped cream. | chefmelt.com

These indulgent gluten-free mini cheesecakes have completely changed how I think about desserts. With their smooth, creamy filling sitting on top of a rich graham cracker base, they pack all the luxury of classic cheesecake into cute individual servings.

My next-door neighbor tried these at our neighborhood summer party and asked for the recipe right away. Now whenever we have people over for dinner, these tiny treats are what everyone wants.

  • Gluten-free graham crackers: Create that essential crunchy foundation that stays firm against the soft filling
  • Cream cheese: Gives that classic tangy flavor - always go for full-fat for the creamiest results
  • Sour cream: Brings extra moisture and slight tartness that cuts through sweetness
  • Eggs: Help everything set up with that traditional cheesecake feel
  • Vanilla extract: Rounds out the flavor profile - skip the fake stuff
  • Lemon juice: Lifts all the tastes without making things taste lemony
  • Brown sugar: Adds warm caramel notes to the crust that work well with the crackers

Easy Preparation Guide

Get the Base Ready:
Crush gluten-free graham crackers into fine bits. Combine with melted butter and brown sugar until it looks like damp sand. This makes a solid foundation that stays together when firmly pushed into paper liners. Press roughly 1½ tablespoons into each cup using a glass bottom for an even layer.
Whip Up the Filling:
Whisk room temperature cream cheese until it's completely smooth, about 2 minutes. Getting it to room temp first is super important or you'll end up with annoying lumps that won't mix in. Add your sour cream, eggs, sugar, vanilla, and lemon juice, mixing slowly to keep air out which can make cracks. You want the mix pourable and silky.
Cook Just Right:
Fill each cup almost to the top using a greased cookie scoop for easy portioning. Bake at 350°F for 20 minutes exactly until the outer edges set but the middle still wobbles slightly. They'll puff up while baking but sink a bit as they cool, making the perfect spot for toppings. Don't leave them in too long or they'll dry out.
Let Them Rest:
Cool the cheesecakes completely at room temp before putting them in the fridge for at least 3 hours, though overnight works best. This waiting period helps the flavors come together and creates that perfect texture. Trust me, waiting makes every bite worth it.
A plate of desserts with berries and blueberries. Pin it
A plate of desserts with berries and blueberries. | chefmelt.com

I've found Schär Honeygrams are the best kept secret for gluten-free graham crusts. I started using them after trying to make my own alternatives that just fell apart. They give that real graham taste that makes these mini cheesecakes taste just like ones from fancy bakeries.

Fantastic Prep-Ahead Treat

These tiny cheesecakes actually get better when made a day early. The flavors get deeper and the texture turns even more velvety after sitting overnight in the fridge. That's why they're so good for parties when you don't want to rush around the day of your event. Just keep them covered in the fridge without any toppings until about half an hour before you serve them.

Fun Topping Suggestions

What makes these mini cheesecakes so great is how you can dress them up in so many ways. Fresh berries add color and natural sweetness. A spoonful of lemon curd brings a zingy brightness that works really well with the rich cake. Chocolate ganache turns them into an extra special treat. For parties, you could set up a topping station so everyone can fix their own dessert just how they like it.

Fixing Common Problems

Even people who bake all the time sometimes run into issues with cheesecake. If the tops crack, don't stress about it. As they cool down, small cracks usually close up on their own. For bigger cracks, just put some whipped cream or fruit on top and nobody will notice. If your cheesecakes sink a lot in the middle, they probably needed a bit more time in the oven. Next time, try baking them for another minute or two.

A plate of desserts with berries and cream. Pin it
A plate of desserts with berries and cream. | chefmelt.com

Frequently Asked Questions

→ How do I create a gluten-free crust?

Take gluten-free graham crackers—brands like Schär are great—mash them up, then mix with melted butter and some sugar. Press this mix into muffin wrappers for a great base.

→ What are good toppings for these cheesecakes?

Some favorites include whipped cream, fresh fruit, chocolate drizzle, lemon curd, caramel, or canned cherries for a classic look.

→ Can I prepare these cheesecakes in advance?

Definitely! After they’ve cooled, store them in the fridge covered. Add any decorations or toppings when you're ready to serve.

→ Are these cheesecakes freezable?

Yes! You can freeze them, plain and without toppings, in a sealed container for up to four weeks. Let them thaw in the fridge or leave at room temperature for a few minutes before eating.

→ Why do cracks show up on my cheesecakes?

Cracks aren’t a problem—they often close as they cool. Keep your ingredients room temperature to avoid cracking, or don’t worry about it since toppings will cover any imperfections!

Gluten Free Mini Cheesecakes

Velvety gluten-free bites with graham crust.

Prep Time
10 Minutes
Cook Time
20 Minutes
Total Time
30 Minutes


Difficulty: Easy

Cuisine: American

Yield: 12 Servings (12 small cheesecakes)

Dietary: Vegetarian, Gluten-Free

Ingredients

→ Crust

01 5 tablespoons butter, melted
02 2 tablespoons packed light brown sugar
03 1 1/4 cups gluten-free graham cracker crumbs (like Schär Honeygrams)

→ Cheesecake Filling

04 2 large eggs, at room temperature
05 1 teaspoon fresh lemon juice
06 1/2 cup granulated sugar
07 1/2 cup sour cream, softened to room temp
08 2 (8-oz) packs of room-temp cream cheese
09 2 teaspoons vanilla extract (pure)

Instructions

Step 01

Turn on your oven and set it to 350°F (175°C). Pop 12 cupcake liners into a muffin tin.

Step 02

Toss the graham crackers into a food processor or smash them inside a bag with a rolling pin until they're crumbs. Mix those with brown sugar and melted butter. Scoop out about 1 1/2 tablespoons per muffin liner and press it firmly to make the base.

Step 03

Grab a mixing bowl and use a hand mixer on low-medium to whip up the cream cheese for 1-2 minutes until it’s light and airy. Stir in the sour cream, eggs, sugar, vanilla, and lemon juice. Keep mixing until it’s smooth.

Step 04

Take a cookie scoop and grease it lightly. Spoon the cheesecake mix into each muffin liner until they’re all filled to the brim.

Step 05

Bake for 20 minutes. Pull them out when the tops just start to show a little bit of color. They’ll puff up but settle down as they cool.

Step 06

Let them come to room temp. Cover them up and chill in the fridge for at least three hours or, better yet, overnight. Right before serving, leave them at room temp for a few minutes, then gently take them out of the muffin tin.

Step 07

Leave them plain or jazz them up with the toppings you like before digging in.

Notes

  1. Warm ingredients mix better. Forget lumps in the batter!
  2. Need room-temp ingredients fast? Let them sit in warm water for 2-3 minutes.
  3. Cracking isn’t a worry. The tops will smooth out when cooling.
  4. You can make these tiny cheesecakes ahead and keep them chilled.

Tools You'll Need

  • Muffin tin with 12 cups
  • Paper cupcake liners
  • Rolling pin and plastic bag or a food processor
  • One large mixing bowl
  • Electric hand mixer
  • Cookie scoop, lightly greased

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Has dairy (butter, sour cream, cream cheese)
  • Includes eggs

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 153
  • Total Fat: 8 g
  • Total Carbohydrate: 17 g
  • Protein: 2 g